Mardi 05 Décembre 2023
Data Papers
Les Data Papers
Le Data Paper est une publication scientifique dont le but principal est de décrire un jeu de données ou un ensemble de jeux de données, plutôt que de rendre compte d’une enquête de recherche.
Quelques exemples de data papers
- A Taxonomically-verified and Vouchered Checklist of the Vascular Plants of the Republic of Guinea. Gosline, G., Bidault, E., van der Burgt, X. et al. Sci Data 10, 327 (2023). https://doi.org/10.1038/s41597-023-02236-6
- All taxa biodiversity inventory of the Bois de Bouis estate (Var, France): a 10-year public-private partnership. Lacoeuilhe A, Percevault L, Ichter J, Gourdain P, Herard K, Michaud H, Poncet L, Ramage T, Roquinarc'h O, Withers P (2023). Biodiversity Data Journal 11: e103280. https://doi.org/10.3897/BDJ.11.e103280
- Anopheles sampling collections in the health districts of Korhogo (Côte d’Ivoire) and Diébougou (Burkina Faso) between 2016 and 2018. Paul Taconet, Barnabas Zogo, Dieudonné Diloma Soma, Ludovic P. Ahoua Alou, Karine Mouline, Roch Kounbobr Dabiré, Alphonsine Amanan Koffi, Cédric Pennetier, Nicolas Moiroux, Gigabyte, 2023 https://doi.org/10.46471/gigabyte.83
- The global EPTO database: Worldwide occurrences of aquatic insects. Grigoropoulou, A., Hamid, S. A., Acosta, R., Akindele, E. O., Al-Shami, S. A., Altermatt, F., Amatulli, G., Angeler, D. G., Arimoro, F. O., Aroviita, J., Astorga-Roine, A., Bastos, R. C., Bonada, N., Boukas, N., Brand, C., Bremerich, V., Bush, A., Cai, Q., Callisto, M. ... Domisch, S. (2023). Global Ecology and Biogeography, 32, 642–655. https://doi.org/10.1111/geb.13648
- Maps of area of habitat for Italian amphibians and reptiles.Nania D, Lumbierres M, Ficetola GF, Falaschi M, Pacifici M, Rondinini C (2022). Nature Conservation 49: 117-129. https://doi.org/10.3897/natureconservation.49.82931
- Small terrestrial mammals (Rodentia and Soricomorpha) along a gradient of forest anthropization (reserves, managed forests, urban parks) in France. Julien Pradel, Marie Bouilloud, Anne Loiseau, Sylvain Piry, Maxime Galan, Emmanuelle Artige, Guillaume Castel, Julien Ferrero, Romain Gallet, Geoffrey Thuel, Nathalie Vieira, Nathalie Charbonnel (2022). Biodiversity Data Journal 10: e95214. https://doi.org/10.3897/BDJ.10.e95214
- SLAM Project - Long Term Ecological Study of the Impacts of Climate Change in the natural forests of Azores: V - New records of terrestrial arthropods after ten years of SLAM sampling. Lhoumeau S, Cardoso P, Boieiro M, Ros-Prieto A, Costa R, Lamelas-Lopez L, Leite A, Amorim do Rosário I, Gabriel R, Malumbres-Olarte J, Rigal F, Santos AMC, Tsafack N, Ferreira MT, Borges PAV (2022). Biodiversity Data Journal 10: e97952. https://doi.org/10.3897/BDJ.10.e97952
- SLAM Project - Long Term Ecological Study of the Impacts of Climate Change in the natural forest of Azores: IV - The spiders of Terceira and Pico Islands (2019-2021) and general diversity patterns after ten years of sampling. Lhoumeau S, Cardoso P, Costa R, Boieiro M, Malumbres-Olarte J, Amorim IR, Rigal F, Santos AMC, Gabriel R, Borges PAV (2022). Biodiversity Data Journal 10: e96442. https://doi.org/10.3897/BDJ.10.e96442
- A combined microbial and biogeochemical dataset from high-latitude ecosystems with respect to methane cycle. Barret, M., Gandois, L., Thalasso, F. et al. Sci Data 9, 674 (2022). https://doi.org/10.1038/s41597-022-01759-8
- Complete distribution of the genus Laevilitorina (Littorinimorpha, Littorinidae) in the Southern Hemisphere: remarks and natural history. Rosenfeld S, Maturana CS, Spencer HG, Convey P, Saucède T, Brickle P, Bahamonde F, Jossart Q, Poulin E, Gonzalez-Wevar C (2022) ZooKeys 1127: 61-77. https://doi.org/10.3897/zookeys.1127.91310
- A spatially-explicit database of tree-related microhabitats in Europe and beyond. Zudin S, Heintz W, Kraus D, Krumm F, Larrieu L, Schuck A (2022). Biodiversity Data Journal 10: e91385. https://doi.org/10.3897/BDJ.10.e91385
- Myctobase, a circumpolar database of mesopelagic fishes for new insights into deep pelagic prey fields. Woods, B., Trebilco, R., Walters, A. et al. Sci Data 9, 404 (2022). https://doi.org/10.1038/s41597-022-01496-y
- AIMSurv: First pan-European harmonized surveillance of Aedes invasive mosquito species of relevance for human vector-borne diseases. Miguel Ángel Miranda,Carlos Barceló,Daniele Arnoldi,Xenia Augsten,Karin Bakran-lebl,George Balatsos,Mikel Bengoa,Philippe Bindler,Kristina Boršová,Maria Bourquia,Daniel Bravo-barriga,Viktória Čabanová,Beniamino Caputo,Maria Christou,Sarah Delacour,Roger Eritja,Ouafaa Fassi-fihri,Martina Ferraguti,Eleonora Flacio,Eva Frontera,Hans-peter Fuehrer,Ana L. García-pérez,Pantelis Georgiades,Sandra Gewehr,Fátima Goiri,Mikel Alexander González,Martin Gschwind,Rafael Gutiérrez-lópez,Cintia Horváth,Adolfo Ibáñez-justicia,Viola Jani,Përparim Kadriaj,Katja Kalan,Mihaela Kavran,Ana Klobucar,Kornélia Kurucz,Javier Lucientes,Renke Lühken,Sergio Magallanes,Giovanni Marini,Angeliki F. Martinou,Alice Michelutti,Andrei Daniel Mihalca,Tomás Montalvo,Fabrizio Montarsi,Spiros Mourelatos,Nesade Muja-bajraktari,Pie Müller,Gregoris Notarides,Hugo Costa Osório,José A. Oteo,Kerem Oter,Igor Pajović,John R. B. Palmer,Suncica Petrinic,Cristian Răileanu,Christian Ries,Elton Rogozi,Ignacio Ruiz-arrondo,Isis Sanpera-calbet,Nebojša Sekulić,Kivanc Sevim,Kurtesh Sherifi,Cornelia Silaghi,Manuel Silva,Nikolina Sokolovska,Zoltán Soltész,Tatiana Sulesco,Jana Šušnjar,Steffanie Teekema,Andrea Valsecchi,Marlen Ines Vasquez,Enkelejda Velo,Antonios Michaelakis,William Wint,Dušan Petrić,Francis Schaffner,Alessandra Della Torre,Consortium Aim-cost/aim-surv,Gigabyte,2022 https://doi.org/10.46471/gigabyte.57
- The first large-scale All Taxa Biodiversity Inventory in Europe: description of the Mercantour National Park ATBI data sets. Ichter J, Gargominy O, Leccia M-F, Robert S, Poncet L (2022). Biodiversity Data Journal 10: e85901. https://doi.org/10.3897/BDJ.10.e85901
- Geohistorical dataset of ten plant species introduced into Occitania (France). Claudel M, Lerigoleur E, Brun C, Guillerme S (2022). Biodiversity Data Journal 10: e76283. https://doi.org/10.3897/BDJ.10.e76283
- The nationwide ‘ZNIEFF’ inventory in France: an open dataset of more than one million species data in zones of high ecological value. Lepareur F, Manceau M, Reyjol Y, Touroult J, Robert S, Vest F, Horellou A, Poncet L (2022). Biodiversity Data Journal 10: e71222. https://doi.org/10.3897/BDJ.10.e71222
- Monitoring Arthropods in Azorean Agroecosystems: the project AGRO-ECOSERVICES. Borges PAV, Nunes R, Lamelas-López L, Pereira E, Costa R, Monjardino P, Lopes DH, Soares AO, Gil A, Rigal F, Ferrante M, Lövei GL (2021). Biodiversity Data Journal 9: e77548. https://doi.org/10.3897/BDJ.9.e77548
- The Belgica 121 expedition to the Western Antarctic Peninsula: a detailed biodiversity census. Danis B, Christiansen H, Guillaumot C, Heindler FM, Jossart Q, Moreau C, Pasotti F, Robert H, Wallis B, Saucède T (2021). Biodiversity Data Journal 9: e70590. https://doi.org/10.3897/BDJ.9.e70590
- Kakila database: Towards a FAIR community approved database of cetacean presence in the waters of the Guadeloupe Archipelago, based on citizen science. Coché L, Arnaud E, Bouveret L, David R, Foulquier E, Gandilhon N, Jeannesson E, Le Bras Y, Lerigoleur E, Lopez PJ, Madon B, Sananikone J, Sèbe M, Le Berre I, Jung J-L (2021) Biodiversity Data Journal 9: e69022. https://doi.org/10.3897/BDJ.9.e69022
- Distribution of macroalgae in the area of Calvi (Corsica). Katz L, Sirjacobs D, Gobert S, Lejeune P, Danis B (2021) Biodiversity Data Journal 9: e68249.
- Occurrence data for the two cryptic species of Cacopsylla pruni (Hemiptera: Psylloidea). Sauvion N, Peccoud J, Meynard CN, Ouvrard D (2021) Biodiversity Data Journal 9: e68860. https://doi.org/10.3897/BDJ.9.e68860
- Revision of the species Chalcidoidea (Insecta, Hymenoptera) deposited in the Museum of Natural History of the Scientific Institute in Rabat (Morocco) Kissayi, K. Villemant, C. Douaik, A. Bentata, F. Labhilili, M. Benhoussa, A. (2020) Arxius de Miscel·lània Zoològica. https://doi.org/10.15470/q0ya99
- Species diversity of myrmecofauna (Hymenoptera, Formicidae) on the southern slope of Djurdjura National Park (Northern Algeria) Labbacci, A. Marniche, F. Daoudi–Hacini, S. Boulay, R. Milla, A. (2020) Arxius de Miscel·lània Zoològica. https://doi.org/10.15470/htbs0q
- Transdisciplinary Bioblitz: Rapid biotic and abiotic inventory allows studying environmental changes over 60 years at the Biological Field Station of Paimpont (Brittany, France) and opens new interdisciplinary research opportunities Nicolai A, Guernion M, Guillocheau S, Hoeffner K, Le Gouar P, Ménard N, Piscart C, Vallet D, Hervé MET, Benezeth E, Chedanne H, Blémus J, Vernon P, Cylly D, Hotte H, Loïs G, Mai B, Perez G, Ouisse T, Monard C, Wiegand C, Caudal J-P, Butet A, Dahirel M, Barbe L, Balbi M, Briand V, Bormans M, Charrier M, Bouger G, Jung V, Le Lann C, Pannard A, Petillon J, Rantier Y, Marguerie D, Tougeron K, Devogel P, Dugravot S, Dubos T, Garrin M, Carnet M, Gouraud C, Chambet A, Esnault J, Poupelin M, Welk E, Bütof A, Dubois GF, Humbert G, Marie-Réau O, Norvez O, Richard G, Froger B, Rochais C, Potthoff M, Ayati K, Bellido A, Rissel A, Santonja M, Farcy J-O, Collias E, Sene L, Cluzeau D, Supper R (2020). Biodiversity Data Journal 8: e50451.. https://doi.org/10.3897/BDJ.7.e31817
- Continental data on cave-dwelling spider communities across Europe (Arachnida: Araneae). Mammola S, Cardoso P, Angyal D, Balázs G, Blick T, Brustel H, Carter J, Ćurčić S, Danflous S, Dányi L, Déjean S, Deltshev C, Elverici M, Fernández J, Gasparo F, Komnenov M, Komposch C, Kováč L, Kunt KB, Mock A, Moldovan O, Naumova M, Pavlek M, Prieto CE, Ribera C, Rozwałka R, Růžička V, Vargovitsh RS, Zaenker S, Isaia M (2019) Continental data on cave-dwelling spider communities across Europe (Arachnida: Araneae). Biodiversity Data Journal 7: e38492. https://doi.org/10.3897/BDJ.8.e50451
- Frozen Zoo: a collection of permafrost samples containing viable protists and their viruses Malavin S, Shmakova L, Claverie J-M, Rivkina E (2020). Biodiversity Data Journal 8: e51586. https://doi.org/10.3897/BDJ.8.e51586
- The retrospective analysis of Antarctic tracking data project Ropert-Coudert, Y., Van de Putte, A.P., Reisinger, R.R. et al. Sci Data 7, 94 (2020). https://doi.org/10.1038/s41597-020-0406-x
- Bat species richness and activity in Dghoumes National Park (Southwest Tunisia): a preliminary survey Dalhoumi, R. Aissa, P. Beyrem, H. Aulagnier, S. Arxius de Miscel·lània Zoològica, 18: 89-100 https://doi.org/10.32800/amz.2020.18.0089
- Standardised inventories of spiders (Arachnida, Araneae) of Macaronesia II: The native forests and dry habitats of Madeira archipelago (Madeira and Porto Santo islands) Malumbres-Olarte J, Boieiro M, Cardoso P, Carvalho R, Crespo LCF, Gabriel R, Macías Hernández N, Paulo OS, Pereira F, Rego C, Ros-Prieto A, Silva I, Vieira A, Rigal F, Borges PAV (2020) Biodiversity Data Journal 8: e47502. https://doi.org/10.3897/BDJ.8.e47502
- Aquatic eDNA for monitoring French Guiana biodiversity. Murienne J, Cantera I, Cerdan A, Cilleros K, Decotte J-B, Dejean T, Vigouroux R, Brosse S (2019). Biodiversity Data Journal 7: e37518. https://doi.org/10.3897/BDJ.7.e37518
- The PPEAO experimental fishing dataset: Fish from West African estuaries, lagoons and reservoirs. Simier M, Ecoutin J, Tito de Morais L (2019). Biodiversity Data Journal 7: e31374. https://doi.org/10.3897/BDJ.7.e31374
- A benchmark dataset of herbarium specimen images with label data. Dillen M, Groom Q, Chagnoux S, Güntsch A, Hardisty A, Haston E, Livermore L, Runnel V, Schulman L, Willemse L, Wu Z, Phillips S (2019). Biodiversity Data Journal 7: e31817. https://doi.org/10.3897/BDJ.7.e31817
- Continental data on cave-dwelling spider communities across Europe (Arachnida: Araneae). Mammola S, Cardoso P, Angyal D, Balázs G, Blick T, Brustel H, Carter J, Ćurčić S, Danflous S, Dányi L, Déjean S, Deltshev C, Elverici M, Fernández J, Gasparo F, Komnenov M, Komposch C, Kováč L, Kunt KB, Mock A, Moldovan O, Naumova M, Pavlek M, Prieto CE, Ribera C, Rozwałka R, Růžička V, Vargovitsh RS, Zaenker S, Isaia M (2019) Continental data on cave-dwelling spider communities across Europe (Arachnida: Araneae). Biodiversity Data Journal 7: e38492. https://doi.org/10.3897/BDJ.7.e38492
- Fungi of French Guiana gathered in a taxonomic, environmental and molecular dataset. Jaouen, G., Sagne, A., Buyck, B. et al. Fungi of French Guiana gathered in a taxonomic, environmental and molecular dataset. Sci Data 6, 206 (2019) https://doi.org/10.1038/s41597-019-0218-z
- Standardised inventories of spiders (Arachnida, Araneae) of Macaronesia I: The native forests of the Azores (Pico and Terceira islands) Malumbres-Olarte J, Cardoso P, Crespo L, Gabriel R, Pereira F, Carvalho R, Rego C, Nunes R, Ferreira M, Amorim I, Rigal F, Borges P (2019) Standardised inventories of spiders (Arachnida, Araneae) of Macaronesia I: The native forests of the Azores (Pico and Terceira islands). Biodiversity Data Journal 7: e32625. https://doi.org/10.3897/BDJ.7.e32625
- FLOTROP, a massive contribution to plant diversity data for open ecosystems in northern tropical Africa Taugourdeau, S., Daget, P., Chatelain, C. et al. FLOTROP, a massive contribution to plant diversity data for open ecosystems in northern tropical Africa. Sci Data 6, 118 (2019) https://doi.org/10.1038/s41597-019-0120-8
- Antarctic and Sub-Antarctic Asteroidea database. Moreau C, Mah C, Agüera A, Améziane N, Barnes D, Crokaert G, Eléaume M, Griffiths H, Guillaumot C, Hemery LG, Jażdżewska A, Jossart Q, Laptikhovsky V, Linse K, Neill K, Sands C, Saucède T, Schiaparelli S, Siciński J, Vasset N, Danis B (2018) ZooKeys 747: 141-156. https://doi.org/10.3897/zookeys.747.22751
- Southern Ocean Echinoids database – An updated version of Antarctic, Sub-Antarctic and cold temperate echinoid database. Fabri-Ruiz S, Saucède T, Danis B, David B (2017). ZooKeys 697: 1-20. https://doi.org/10.3897/zookeys.697.14746
- Abundance indices and biological traits of juvenile salmon (Salmo salar) sampled in three rivers on the Atlantic and Channel coasts (France). Marchand F, Beaulaton L, Prévost E, Delanoë R, Destouches J-P, Gueraud F, Guilloux Y, Jeannot N, Huchet E, Lange F, Rives J, Tremblay J, Herrard N, Azam D. (2017) Biodiversity Data Journal 5: e15125 - https://doi.org/10.3897/BDJ.5.e15125
- Building a database for long-term monitoring of benthic macrofauna in the Pertuis-Charentais (2004-2014). Philippe A, Plumejeaud-Perreau C, Jourde J, Pineau P, Lachaussée N, Joyeux E, Corre F, Delaporte P, Bocher P (2017) Biodiversity Data Journal 5: e10288. https://doi.org/10.3897/BDJ.5.e10288
- The French Muséum national d’histoire naturelle vascular plant herbarium collection dataset Gwenaël Le Bras, Marc Pignal, Marc L. Jeanson, Serge Muller, Cécile Aupic, Benoît Carré, Grégoire Flament, Myriam Gaudeul, Claudia Gonçalves, Vanessa R. Invernón, Florian Jabbour, Elodie Lerat, Porter P. Lowry, Bérangère Offroy, Eva Pérez Pimparé, Odile Poncy, Germinal Rouhan, Thomas Haevermans. Scientific Data 4, Article number: 170016 (2017). DOI: 10.1038/sdata.2017.16
- The African Crane Database (1978-2014): Records of three threatened crane species Gruidae from southern and eastern Africa. Smith T, Page-Nicholson S, Morrison K, Gibbons B, Jones M, van Niekerk M, Botha B, Oliver K, McCann K, Roxburgh L (2016). Biodiversity Data Journal 4: e9794. https://doi.org/10.3897/BDJ.4.e9794
- Echinoids of the Kerguelen Plateau – occurrence data and environmental setting for past, present, and future species distribution modelling. Guillaumot C, Martin A, Fabri-Ruiz S, Eléaume M, Saucède T (2016) ZooKeys 630: 1-17. https://doi.org/10.3897/zookeys.630.9856
- GuiaTreeKey, a multi-access electronic key to identify tree genera in French Guiana. Engel J, Brousseau L, Baraloto C (2016) PhytoKeys 68: 27-44. https://doi.org/10.3897/phytokeys.68.8707
- RAINBIO: a mega-database of tropical African vascular plants distributions Dauby G, Zaiss R, Blach-Overgaard A, Catarino L, Damen T, Deblauwe V, Dessein S, Dransfield J, Droissart V, Duarte MC, Engledow H, Fadeur G, Figueira R, Gereau RE, Hardy OJ, Harris DJ, de Heij J, Janssens S, Klomberg Y, Ley AC, Mackinder BA, Meerts P, van de Poel JL, Sonké B, Sosef MSM, Stévart T, Stoffelen P, Svenning J-C, Sepulchre P, van der Burgt X, Wieringa JJ, Couvreur TLP (2016) PhytoKeys 74: 1-18. https://doi.org/10.3897/phytokeys.74.9723
- Systematics and biology of some species of Micrurapteryx Spuler (Lepidoptera, Gracillariidae) from the Holarctic Region, with re-description of M. caraganella (Hering) from Siberia. Kirichenko N, Triberti P, Mutanen M, Magnoux E, Landry J, Lopez-Vaamonde C (2016) ZooKeys 579: 99-156. https://doi.org/10.3897/zookeys.579.7166
- An exhaustive inventory of coniferous trees in an agricultural landscape. Rousselet J, Roques A, Garcia J, Rossi J (2015) Biodiversity Data Journal 3: e4660. https://doi.org/10.3897/BDJ.3.e4660
- East Weddell Sea echinoids from the JR275 expedition. Saucède T, Griffiths H, Moreau C, Jackson JA, Sands C, Downey R, Reed A, Mackenzie M, Geissler P, Linse K (2015) ZooKeys 504: 1-10. https://doi.org/10.3897/zookeys.504.8860
- Fauna Europaea: Gastrotricha. Balsamo M, d`Hondt J, Kisielewski J, Todaro M, Tongiorgi P, Guidi L, Grilli P, de Jong Y (2015) Biodiversity Data Journal 3: e5800. https://doi.org/10.3897/BDJ.3.e5800
- Online database for mosquito (Diptera, Culicidae) occurrence records in French Guiana. Talaga S, Murienne J, Dejean A, Leroy C (2015) ZooKeys 532: 107-115. doi: 10.3897/zookeys.532.6176
- PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera). Rougerie R, Lopez-Vaamonde C, Barnouin T, Delnatte J, Moulin N, Noblecourt T, Nusillard B, Parmain G, Soldati F, Bouget C (2015) Biodiversity Data Journal 3: e4078. https://doi.org/10.3897/BDJ.3.e4078
- SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories. Just A, Gourvil J, Millet J, Boullet V, Milon T, Mandon I, Dutrève B (2015) PhytoKeys 56: 47-60. doi: 10.3897/phytokeys.56.5723
- The Myriapoda and Onychophora collection (MY) of the Muséum national d’Histoire naturelle (MNHN, Paris). Le Bras G, Geoffroy J-J, Albenga L, Mauriès J-P (2015) ZooKeys 518: 139-153. doi: 10.3897/zookeys.518.10223
- The Jean Guttierez Spider Mite Collection. Migeon A. ZooKeys 489: 15-24 (2015) doi: 10.3897/zookeys.489.9292
- The spatiotemporal pattern of earthworm community in the grass savannas of Lamto (Ivory Coast). Rossi J, Lavelle P (2015) Biodiversity Data Journal 3: e6515. https://doi.org/10.3897/BDJ.3.e6515
- An occurence records database of French Guiana harvestmen (Arachnida, Opiliones). Cally S, Solbès P, Grosso B, Murienne J (2014) Biodiversity Data Journal 2: e4244. doi: 10.3897/BDJ.2.e4244
- A database of life-history traits of European amphibians. Trochet A, Moulherat S, Calvez O, Stevens V, Clobert J, Schmeller D (2014) Biodiversity Data Journal 2: e4123. https://doi.org/10.3897/BDJ.2.e4123
- Life-history trait database of European reptile species. Grimm A, Ramírez AMP, Moulherat S, Reynaud J, Henle K (2014) Nature Conservation 9: 45-67. https://doi.org/10.3897/natureconservation.9.8908
- Tree diversity of the Dja Faunal Reserve, southeastern Cameroon. Sonké B, Couvreur T (2014) Biodiversity Data Journal 2: e1049. https://doi.org/10.3897/BDJ.2.e1049
- Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea). Hemery LG, Améziane N, Eléaume M (2013) ZooKeys 315: 55–64. doi: 10.3897/zookeys.315.5673
- Fossil echinoid (Echinoidea, Echinodermata) diversity of the Early Cretaceous (Hauterivian) in the Paris Basin (France). Thomas Saucède (2013) Zookeys doi: 10.3897/zookeys.325.5085
- Antarctic, Sub-Antarctic and cold temperate echinoid database. Pierrat et al. ZooKeys 204: 47–52 (2012)
